Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs138040427 chr4:70054933 G/A 7.82E-13 117 39.75 42.3 6 KM Plot
THYM rs138148099 chr4:70282816 C/A 6.15E-13 118 41.77 42.3 6 KM Plot
THYM rs138233436 chr7:29725168 C/G 3.55E-13 119 37.63 48.18 6 KM Plot
THYM rs138302348 chr6:135140753 ATTTC/A 9.92E-5 115 37.63 49.85 23.7 KM Plot
THYM rs1383602 chr8:39927776 T/G 8.75E-5 119 40.67 42.73 28.43 KM Plot
THYM rs138364286 chr4:70064326 T/G 5.73E-13 118 39.75 49.6 6 KM Plot
THYM rs138616288 chr19:43339404 T/G 0.00014 117 45.87 26 28.43 KM Plot
THYM rs138693113 chr4:70278183 T/C 4.8E-13 119 41.22 42.3 6 KM Plot
THYM rs138761357 chr2:30816184 AC/A 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs138893084 chr11:125582641 T/C 0.000188 119 44.38 35.67 23.42 KM Plot
THYM rs139048896 chr20:29509481 C/G 2.67E-13 118 38.13 50.53 6 KM Plot
THYM rs139079487 chr1:227464625 G/T 0.000123 119 42.82 37.13 19.63 KM Plot
THYM rs139610993 chr2:30813384 T/TTA 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs139616943 chr9:97125603 G/T 7.78E-5 119 41.77 40.43 17.03 KM Plot
THYM rs139879286 chr7:29718807 G/A 3.55E-13 119 37.63 48.18 6 KM Plot