Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
THYM | rs138040427 | chr4:70054933 | G/A | 7.82E-13 | 117 | 39.75 | 42.3 | 6 | KM Plot |
THYM | rs138148099 | chr4:70282816 | C/A | 6.15E-13 | 118 | 41.77 | 42.3 | 6 | KM Plot |
THYM | rs138233436 | chr7:29725168 | C/G | 3.55E-13 | 119 | 37.63 | 48.18 | 6 | KM Plot |
THYM | rs138302348 | chr6:135140753 | ATTTC/A | 9.92E-5 | 115 | 37.63 | 49.85 | 23.7 | KM Plot |
THYM | rs1383602 | chr8:39927776 | T/G | 8.75E-5 | 119 | 40.67 | 42.73 | 28.43 | KM Plot |
THYM | rs138364286 | chr4:70064326 | T/G | 5.73E-13 | 118 | 39.75 | 49.6 | 6 | KM Plot |
THYM | rs138616288 | chr19:43339404 | T/G | 0.00014 | 117 | 45.87 | 26 | 28.43 | KM Plot |
THYM | rs138693113 | chr4:70278183 | T/C | 4.8E-13 | 119 | 41.22 | 42.3 | 6 | KM Plot |
THYM | rs138761357 | chr2:30816184 | AC/A | 1.33E-8 | 119 | 36.4 | 50.1 | 33.13 | KM Plot |
THYM | rs138893084 | chr11:125582641 | T/C | 0.000188 | 119 | 44.38 | 35.67 | 23.42 | KM Plot |
THYM | rs139048896 | chr20:29509481 | C/G | 2.67E-13 | 118 | 38.13 | 50.53 | 6 | KM Plot |
THYM | rs139079487 | chr1:227464625 | G/T | 0.000123 | 119 | 42.82 | 37.13 | 19.63 | KM Plot |
THYM | rs139610993 | chr2:30813384 | T/TTA | 1.33E-8 | 119 | 36.4 | 50.1 | 33.13 | KM Plot |
THYM | rs139616943 | chr9:97125603 | G/T | 7.78E-5 | 119 | 41.77 | 40.43 | 17.03 | KM Plot |
THYM | rs139879286 | chr7:29718807 | G/A | 3.55E-13 | 119 | 37.63 | 48.18 | 6 | KM Plot |